Omicron

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Omicron, should I expose myself?

   

The very early signs - 11/29/21
Omicron, should I expose myself?
The Latest - 11/26/21
Reinfections Seen in Early U.S. Cases of Omicron - 12.10.21
Classification of Omicron (B.1.1.529): SARS-CoV-2 Variant of Concern - WHO - 11/26/21
Fauci Says Omicron Variant Is Likely Already Here, NY Declares State of Emergency 1/27/21

Classification of Omicron (B.1.1.529): SARS-CoV-2 Variant of Concern - WHO - 11/26/21


The Technical Advisory Group on SARS-CoV-2 Virus Evolution (TAG-VE) is an independent group of experts that periodically monitors and evaluates the evolution of SARS-CoV-2 and assesses if specific mutations and combinations of mutations alter the behaviour of the virus. The TAG-VE was convened on 26 November 2021 to assess the SARS-CoV-2 variant: B.1.1.529.

The B.1.1.529 variant was first reported to WHO from South Africa on 24 November 2021. The epidemiological situation in South Africa has been characterized by three distinct peaks in reported cases, the latest of which was predominantly the Delta variant. In recent weeks, infections have increased steeply, coinciding with the detection of B.1.1.529 variant. The first known confirmed B.1.1.529 infection was from a specimen collected on 9 November 2021.

This variant has a large number of mutations, some of which are concerning. Preliminary evidence suggests an increased risk of reinfection with this variant, as compared to other VOCs. The number of cases of this variant appears to be increasing in almost all provinces in South Africa. Current SARS-CoV-2 PCR diagnostics continue to detect this variant. Several labs have indicated that for one widely used PCR test, one of the three target genes is not detected (called S gene dropout or S gene target failure) and this test can therefore be used as marker for this variant, pending sequencing confirmation. Using this approach, this variant has been detected at faster rates than previous surges in infection, suggesting that this variant may have a growth advantage.

There are a number of studies underway and the TAG-VE will continue to evaluate this variant. WHO will communicate new findings with Member States and to the public as needed.

Based on the evidence presented indicative of a detrimental change in COVID-19 epidemiology, the TAG-VE has advised WHO that this variant should be designated as a VOC, and the WHO has designated B.1.1.529 as a VOC, named Omicron.

As such, countries are asked to do the following:

  • enhance surveillance and sequencing efforts to better understand circulating SARS-CoV-2 variants.
  • submit complete genome sequences and associated metadata to a publicly available database, such as GISAID.
  • report initial cases/clusters associated with VOC infection to WHO through the IHR mechanism.
  • where capacity exists and in coordination with the international community, perform field investigations and laboratory assessments to improve understanding of the potential impacts of the VOC on COVID-19 epidemiology, severity, effectiveness of public health and social measures, diagnostic methods, immune responses, antibody neutralization, or other relevant characteristics.

Individuals are reminded to take measures to reduce their risk of COVID-19, including proven public health and social measures such as wearing well-fitting masks, hand hygiene, physical distancing, improving ventilation of indoor spaces, avoiding crowded spaces, and getting vaccinated.

For reference, WHO has working definitions for SARS-CoV-2 Variant of Interest (VOI) and Variant of Concern (VOC).

A SARS-CoV-2 VOI is a SARS-CoV-2 variant:

  • with genetic changes that are predicted or known to affect virus characteristics such as transmissibility, disease severity, immune escape, diagnostic or therapeutic escape; AND
  • that has been identified as causing significant community transmission or multiple COVID-19 clusters, in multiple countries with increasing relative prevalence alongside increasing number of cases over time, or other apparent epidemiological impacts to suggest an emerging risk to global public health.

A SARS-CoV-2 VOC is a SARS-CoV-2 variant that meets the definition of a VOI (see above) and, through a comparative assessment, has been demonstrated to be associated with one or more of the following changes at a degree of global public health significance:

  • increase in transmissibility or detrimental change in COVID-19 epidemiology; OR
  • increase in virulence or change in clinical disease presentation; OR
  • decrease in effectiveness of public health and social measures or available diagnostics, vaccines, therapeutics

Source:  www.who.int/news/item/26-11-2023-classification-of-omicron-(b.1.1.529)-sars-cov-2-variant-of-concern

The very early signs


The public reaction to new Covid-19 variants has followed a familiar cycle. People tend to assume the worst about two different questions — whether the variant leads to faster transmission of the Covid virus and whether it causes more severe illness among infected people.

The first of those worries came true with the Alpha and Delta variants: Alpha was more contagious than the original version of the virus, and Delta was even more contagious than Alpha. But the second of the worries has largely not been borne out: With both Alpha and Delta, the percentage of Covid cases that led to hospitalization or death held fairly steady.

This pattern isn’t surprising, scientists say. Viruses often evolve in ways that help them flourish. Becoming more contagious allows a virus to do so; becoming more severe has the potential to do the opposite, because more of a virus’s hosts can die before they infect others.

It is too soon to know whether the Omicron variant will fit the pattern. But the very early evidence suggests that it may. Unfortunately, Omicron seems likely to be more contagious than Delta, including among vaccinated people. Fortunately, the evidence so far does not indicate that Omicron is causing more severe illness:

  • Barry Schoub, a South African virologist who advises the government there, has said that Omicron cases have tended to be “mild to moderate.” Schoub added: “That’s a good sign. But let me stress it is early days.”
  • Dr. Rudo Mathivha, the head of the intensive care unit at a hospital in Soweto, South Africa, said that severe cases have been concentrated among people who were not fully vaccinated.
  • Dr. Sharon Alroy-Preis, a top health official in Israel, emphasized yesterday that when vaccinated people were infected, they became only slightly ill, according to the publication Haaretz.
  • As The Times’s Carl Zimmer wrote, “For now, there’s no evidence that Omicron causes more severe disease than previous variants.”

In the initial days after a new variant is discovered, I know that many people focus on worst-case scenarios. The alarming headlines can make it seem as if the pandemic may be about to start all over again, with vaccines powerless to stop the variant.

To be clear, there is genuine uncertainty about Omicron. Maybe it will prove to be worse than the very early signs suggest and cause more severe illness than Delta. But assuming the worst about each worrisome new variant is not a science-based, rational response. And alarmism has its own costs, especially to mental health, notes Dr. Raghib Ali, an epidemiologist at the University of Cambridge.

“Of course we should take it seriously,” Ali wrote on Twitter, “but there is no plausible scenario that this variant is going to take us back to square one (i.e. the situation pre-vaccines).”
Source: The New York Times email 11/29/21

The latest


Health authorities have identified a new variant of the coronavirus with some alarming characteristics. It first cropped up in Botswana and is believed to have contributed to a sharp rise in infections in South Africa. On Friday, the World Health Organization officially named it a “variant of concern,” meaning there's evidence that it's more transmissible or more virulent than previous versions of the virus.

Scientists are particularly worried about this one, known as omicron, because it has an unusual number of mutations — more than have been found in other highly transmissible variants such as delta. Many appear on the spike protein, the part of the virus that binds to human cells and enables it to gain entry. The fear is that these changes could help omicron more easily get around the body's immune defenses and render the vaccines less effective. “This is the most concerning variant we’ve seen since Delta,” Eric Topol, director of the Scripps Research Translational Institute, told The Washington Post.

The announcement of the new variant sent financial markets tumbling, prompted countries around the world to restrict travel from southern Africa, and set off a frantic scientific effort to figure out just how dangerous the evolved pathogen might be. Such a reaction is to be expected at a time when delta is already resurging across Europe and the United States. But it's important to keep the situation in perspective. Scientists still know little about the new variant outside its mutation profile. And so far only a few dozen confirmed cases have been identified in a handful of countries. Public health recommendations haven't changed: get vaccinated, get boosted, get tested when you've got symptoms, and mask up in risky settings. Read our FAQ on the variant for more.

As the Biden administration tries to gauge the threat from omicron, the United States will restrict travel from South Africa and seven other countries in the region. A senior administration official tells my colleague Annie Linskey that the policy is being implemented in “an abundance of caution in light of a new covid-19 variant circulating in Southern Africa." The decision came after the White House arranged a meeting between U.S. and South African doctors to learn more about the variant's spread. “We want to find out scientist-to-scientist exactly what is going on,” President Biden’s chief medical adviser Anthony S. Fauci said in a CNN interview.

As shoppers hit the stores for Black Friday, the Dow plunged more than 900 points on news of the new variant, marking its worst day of 2021. Airline and cruise company stocks dropped. So did oil prices. But investors flocked back to companies that did well during the first year of the pandemic, including Zoom and Peloton.

Infections continue to soar in Michigan, now the country's virus epicenter. Covid-19 patients, most of them unvaccinated, are flooding into hospitals across the Wolverine State, pushing the health-care system into crisis. The state's caseload has hit a record high, and hospitalizations are soon expected to do the same. One health executive described the situation as “almost unmanageable.” At least two dozen other states have seen cases rise at least 5 percent in the past two weeks, signaling that the fifth pandemic wave predicted by health experts is indeed upon us.
Source The Washington Post email 11/26/21

 
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